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crossrefInternational Journal of Molecular Sciences2025-10-16Cited by 5

Navigating the Deep Eutectic Solvent Landscape: Experimental and Machine Learning Solubility Explorations of Syringic, p-Coumaric, and Caffeic Acids

Piotr Cysewski, Tomasz Jeliński, Maciej Przybyłek, Natalia Gliniewicz, Marcel Majkowski, Michał Wąs

Efficiently identifying suitable solvents for active pharmaceutical ingredients (APIs) is critical in drug formulation, yet the vast number of possible solvent-solute combinations presents a significant experimental challenge. This study addresses this by developing a robust machine learning (ML) model for accurately predicting the solubility of three phenolic acids (syringic, p-coumaric, and caffeic) in various deep eutectic solvents (DESs), integrating both experimental and computational investigations. Measured solubility data showed that the choline chloride combined with triethylene glycol in a 1:2 molar ratio was the most efficient system for the dissolution of the studied APIs. Different ML models, utilizing nu-Support Vector Regression (nuSVR) as the core regressor and based on descriptor sets derived from COSMO-RS (Conductor-like Screening Model for Real Solvents) computations, were systematically evaluated. A novel methodology termed DOO-IT (Dual-Objective Optimization with ITerative feature pruning) was employed to address the common challenges of model development with limited, high-value datasets. The final optimal 10-descriptor nuSVR model, selected from an exhaustive, multi-run search, demonstrated outstanding predictive power, offering a highly reliable computational tool for guiding experimental screening, significantly accelerating the exploration of DES-based formulations. This research also provides a strong foundation for future machine learning-guided discovery of chemicals, offering an effective and transferable framework for developing QSPR models for various chemical systems.

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crossrefInternational Journal of Molecular Sciences2025-07-12Cited by 6

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crossrefInternational Journal of Molecular Sciences2025-03-08Cited by 3

Comparison of Deep Learning and Traditional Machine Learning Models for Predicting Mild Cognitive Impairment Using Plasma Proteomic Biomarkers

Kesheng Wang, Donald A. Adjeroh, Wei Fang, Suzy M. Walter, Danqing Xiao, Ubolrat Piamjariyakul, et al.

Mild cognitive impairment (MCI) is a clinical condition characterized by a decline in cognitive ability and progression of cognitive impairment. It is often considered a transitional stage between normal aging and Alzheimer’s disease (AD). This study aimed to compare deep learnin…

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crossrefInternational Journal of Molecular Sciences2026-06-18

Ensemble Machine Learning- and Deep Learning-Driven Identification and Validation of Sennidin B as a Novel Dipeptidyl Peptidase-4 Inhibitor

Shahid Ali, Sibhghatulla Shaikh, Jeong Ho Lim, Eun Ju Lee, Inho Choi

Dipeptidyl peptidase-4 (DPP-4) is a key therapeutic target for type 2 diabetes (T2D). Several synthetic anti-DPP-4 drugs are currently available for the treatment of T2D; however, the need for safe and effective therapies remains unmet due to the side effects associated with exis…

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crossrefInternational Journal of Molecular Sciences2024-09-24Cited by 2

PROTA: A Robust Tool for Protamine Prediction Using a Hybrid Approach of Machine Learning and Deep Learning

Jorge G. Farias, Lisandra Herrera-Belén, Luis Jimenez, Jorge F. Beltrán

Protamines play a critical role in DNA compaction and stabilization in sperm cells, significantly influencing male fertility and various biotechnological applications. Traditionally, identifying these proteins is a challenging and time-consuming process due to their species-speci…

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crossrefInternational Journal of Molecular Sciences2026-07-05

Machine Learning and Deep Learning Frameworks for Human–Virus Protein–Protein Interaction Prediction: Emerging Architectures, Methods, Benchmarks, and Challenges

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The outbreak of coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has emerged as one of the most significant global health crises in recent history. Coronaviruses are a diverse group of RNA viruses classified into alpha,…

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crossrefInternational Journal of Molecular Sciences2025-07-16Cited by 18

Digital Alchemy: The Rise of Machine and Deep Learning in Small-Molecule Drug Discovery

Abdul Manan, Eunhye Baek, Sidra Ilyas, Donghun Lee

This review provides a comprehensive analysis of the transformative impact of artificial intelligence (AI) and machine learning (ML) on modern drug design, specifically focusing on how these advanced computational techniques address the inherent limitations of traditional small-m…

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